PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G238400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 488aa    MW: 52128.6 Da    PI: 6.0816
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G238400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.3e-15139198155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Brast09G238400.1.p 139 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 198
                         57*******************666664477446*************************98 PP
2AP248.12.8e-15241292155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Brast09G238400.1.p 241 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 292
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.46E-21139208No hitNo description
SuperFamilySSF541716.28E-17139207IPR016177DNA-binding domain
PfamPF008476.1E-12139198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-16140207IPR001471AP2/ERF domain
SMARTSM003801.2E-27140212IPR001471AP2/ERF domain
PROSITE profilePS5103219.216140206IPR001471AP2/ERF domain
PRINTSPR003677.6E-6141152IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18241301IPR016177DNA-binding domain
CDDcd000188.23E-24241301No hitNo description
PfamPF008476.1E-10241292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-18242300IPR001471AP2/ERF domain
PROSITE profilePS5103219.348242300IPR001471AP2/ERF domain
SMARTSM003805.7E-33242306IPR001471AP2/ERF domain
PRINTSPR003677.6E-6282302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDMDAAQQQQ HHYPWLNFSL AHHCGMEEEE RGAAAELAAI AGAAPPPKLE DFLGGAGGNS  60
NGGGGGPGLP PAGGAAEMYE SELKLLAAGG FLGGGAAPPP VAALEEQAAD AKVALPLAAA  120
PAPAAETKKA VDSFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQVYLGGYD  180
KEEKAARAYD LAALKYWGAS TTTNFPVADY ETELEDMKHM TRQEFVASLR RKSSGFSRGA  240
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE  300
IGRYNVDSII SSNLPIGTAS GTNRSIKCAL EPTPAISSDV DAPGIAPHSL AFTALPVKYS  360
QHENDYLSFL AMQHHQQGNL QGLGYGLYSS GVNLDFANAH NASAMGAQCY YGNGGGSLHQ  420
QQQEQQDQQQ QQQDDQSQSS NGCPSSMPFA TPMAFSGGAY ESSVTPSPFG YYSPNVAAFQ  480
TPIFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G238400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3653650.0AK365365.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033L15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580707.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-133AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0Q3HA010.0A0A0Q3HA01_BRADI; Uncharacterized protein
STRINGBRADI5G24360.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-119AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]