PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G232000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 335aa    MW: 37701.7 Da    PI: 6.2493
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G232000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.83.3e-1950113163
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykk 63 
                         +W++ e+ a +++r ++++++ ++k++k+lWe+vs+++r++ gf r+p qCk+kw+nl +r+k 
  Brast08G232000.1.p  50 QWSHAETAAFLAIRADLDRSFLSTKRNKALWEAVSARLRDHgGFARTPDQCKSKWKNLVTRFKG 113
                         7*************************************765279******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.01E-2149114No hitNo description
PfamPF138379.9E-1550112No hitNo description
PROSITE profilePS500907.45751108IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDPFHHLNTA FSNPYHPLLS SSPPHPHYPP PLRPQPPPAA EPPERERLPQ WSHAETAAFL  60
AIRADLDRSF LSTKRNKALW EAVSARLRDH GGFARTPDQC KSKWKNLVTR FKGSAIPPPD  120
AADDAPLHQQ HGDHPAAPRG GGGFPFHDEM RRIFEARVER ARALEARKAK GKQHARHDRH  180
PDDAVDGGGA EGEEAGEEDD DEELAEMTLE DDDGEEDGRA AETTARGKKR RRKATAAAAS  240
EQGEVEAMLR EFMRRQAEME ERWAEAAEAR DAERRAREEE WRAAMVALGE ERLALVRRWR  300
EREDAWRARA EEREERRHQL IAALLAKLGG GDTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G232000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759481e-130AK375948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3110L24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566667.11e-116trihelix transcription factor GT-3b
RefseqXP_014753734.11e-116trihelix transcription factor GT-3b
TrEMBLI1HMM91e-115I1HMM9_BRADI; Uncharacterized protein
STRINGBRADI2G38230.11e-115(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-22Trihelix family protein