PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G216000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19532.2 Da    PI: 10.5387
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G216000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.41e-091249340
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                        i nk +r+ t+ kR++ ++K  +EL vLCd+++ ++ +
  Brast08G216000.1.p 12 IVNKVQRKRTLKKRLASLIKMMSELAVLCDVKAFLVAY 49
                        779******************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-5261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.573249IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-15377IPR002100Transcription factor, MADS-box
CDDcd001201.18E-13461No hitNo description
PfamPF003191.2E-91251IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MPPRGRLKLN WIVNKVQRKR TLKKRLASLI KMMSELAVLC DVKAFLVAYV PGEQQPVVWP  60
SPETVLAKKY KELSAAGKVK EPDILTIWKK QVEKHKVKVL NASQANGEGE LKAILMRKLN  120
DFFIGQRRSV EDLSPVVRSE LGCWMEGLLK DVRERIEEKR TDMAGLEGHM V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G216000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233356.12e-77agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3G8C35e-76A0A0Q3G8C3_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.13e-14AGAMOUS-like 46