PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G076800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 232aa    MW: 23521.3 Da    PI: 9.3186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G076800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.3e-213181155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g
  Brast08G076800.1.p 31 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREYRG 81
                        68********.**********83...36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-153181IPR001471AP2/ERF domain
CDDcd000186.14E-183189No hitNo description
Gene3DG3DSA:3.30.730.102.1E-323289IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-233290IPR016177DNA-binding domain
SMARTSM003807.8E-373295IPR001471AP2/ERF domain
PROSITE profilePS5103224.3023289IPR001471AP2/ERF domain
PRINTSPR003673.1E-113344IPR001471AP2/ERF domain
PRINTSPR003673.1E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAPRTSDKTA TPAAATGTGL PHGVGGGAVG PHYRGVRKRP WGRYAAEIRD PAKKSRVWLG  60
TYDTAEEAAR AYDAAAREYR GSKAKTNFPF QSAAAAVTGG GSSNSSTVES SGGDLREAPM  120
QAMPIPPSLE LDLFHRAAAA TAATGAGGMR GFPFSSYPLS HPYYFFGQAA AAAAAGCHAL  180
KLSPPVTVAA VSPSDSGSSS VVDLAPSPPA VSAKKAVVFD LDLNCLPPAE S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-232891165ATERF1
3gcc_A4e-232891165ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G076800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568185.11e-80ethylene-responsive transcription factor 8
SwissprotQ9FE678e-37ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A0A9U7H82e-88A0A0A9U7H8_ARUDO; Uncharacterized protein
STRINGBRADI2G21060.15e-80(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-17erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]