PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G109700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 384aa    MW: 43272.1 Da    PI: 8.2079
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G109700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.2e-093555526
                        --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         C f+++ G C+yG+rC++ H+
  Brast07G109700.1.p 35 VCTFYLK-GSCSYGSRCRYDHV 55
                        6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.328229IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-5228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-7327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5023057IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-43256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-53254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-43554IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-63555IPR000571Zinc finger, CCCH-type
SMARTSM003560.085162188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.601162189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.0E-9224290IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.24E-10226297No hitNo description
CDDcd001620.00113230290No hitNo description
PfamPF136393.7E-7230289IPR001841Zinc finger, RING-type
SMARTSM001842.9E-7231288IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.297231289IPR001841Zinc finger, RING-type
PROSITE patternPS005180255264IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.648318347IPR000571Zinc finger, CCCH-type
SMARTSM003560.01318346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSTKRVLCKF FVHGACLKGE YCEFSHNWSD QANNVCTFYL KGSCSYGSRC RYDHVKVSRN  60
PPVPTPPSSS TPKRNSLVPL PPSSTAARVA STSLQPASAG RPVHIGHQTN PSNQRQQISM  120
DMLAHSETKP AWRNEFQLDS VSEDGIDWSS NRTVQNQTSK KLADMPICSF AAAGNCPYEE  180
ECPHMHGDLC ATCGKMCLHP YRPDEREEHT KLCEKNHKRL EALKRSQEIE CSVCLDRVLS  240
KPTAAERKFG LLSECDHPFC ISCIRNWRGN SPTSGMDVNS ALRACPICRK LSYYVIPSVL  300
WYFSKEEKTE IIDNYKSKLK SIDCKYFDFG TGTCPFGTSC FYKHAYRDGR LEEVILRHLD  360
SEDGTTLIAK NIRLSDFLSR LHL*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G109700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2481880.0AK248188.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563906.10.0E3 ubiquitin-protein ligase makorin isoform X1
RefseqXP_010227725.10.0E3 ubiquitin-protein ligase makorin isoform X1
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLI1GYR50.0I1GYR5_BRADI; Uncharacterized protein
STRINGBRADI1G42720.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-146C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]