PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G040300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 278aa    MW: 28825.5 Da    PI: 4.4227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G040300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-1980130256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr ++ +g+++AeIrdp++   r+r++lg+f+taeeAa  ++ a+++l+g+
  Brast07G040300.1.p  80 KYRGVRLRR-WGKYAAEIRDPRS---RARVWLGTFDTAEEAAMVYDSAALRLRGA 130
                         8*****998.**********954...4**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.4E-3079137IPR001471AP2/ERF domain
PfamPF008474.5E-1280129IPR001471AP2/ERF domain
PROSITE profilePS5103223.1380137IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2180137IPR016177DNA-binding domain
SMARTSM003803.6E-3580143IPR001471AP2/ERF domain
CDDcd000184.73E-3080137No hitNo description
PRINTSPR003679.4E-108192IPR001471AP2/ERF domain
PRINTSPR003679.4E-10103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKQEQIDRAA AAFTATPRIL RVSYEEDPDV TDSSSGDDAD PAVPLPRVPL PASTSVIGAK  60
RRPAGAGGAS GAPMAAGARK YRGVRLRRWG KYAAEIRDPR SRARVWLGTF DTAEEAAMVY  120
DSAALRLRGA SAVTNFPSPP TAAESSDDDS RFSSGSPPSV LRPLLIPPPK LQPPPKAAPD  180
KPDLSSCGGL LGDDDPCCCC CCGGGFPTFL WPDVEDCMLA AGILPGATTD GDDCMLSRLE  240
GCVTAAVEPV TASLADLGEL PTWSEVDGLF FGDGAAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2076144170ATERF1
3gcc_A2e-2076144170ATERF1
5wx9_A2e-20801411476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G040300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690082e-31AK369008.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083K22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229938.11e-109ethylene-responsive transcription factor CRF4
TrEMBLA0A0Q3L8N11e-108A0A0Q3L8N1_BRADI; Uncharacterized protein
STRINGTRIUR3_07811-P14e-42(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.16e-25cytokinin response factor 1