PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G005400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 457aa    MW: 50021.6 Da    PI: 8.3798
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G005400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.79.7e-092663031954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  Brast07G005400.1.p 266 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 303
                         5544589*****************************88 PP
2BELL94.31.1e-30125193472
                BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +lq++ka Lls+++eVd+rY++y+eq+++   sF+a+ag g+a++Yt+lA++a+SrhFr+L+da+++q+
  Brast07G005400.1.p 125 ALQRRKATLLSMVQEVDRRYRRYREQMRATELSFDAAAGAGAAQVYTRLAMRAMSRHFRSLRDALVGQV 193
                         69****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-4158191IPR006563POX domain
PfamPF075263.3E-3767189IPR006563POX domain
PROSITE profilePS5007111.758244307IPR001356Homeobox domain
SMARTSM003898.2E-9247311IPR001356Homeobox domain
CDDcd000868.42E-12247308No hitNo description
SuperFamilySSF466892.78E-17248314IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-27250313IPR009057Homeodomain-like
PfamPF059202.1E-17264303IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MHAWIKPSLC RMTHHHHLLD FSSSSSSPPA PFHHAETTPW PAPTHVPPYY TAPPTTTMPA  60
MTQPLLLNSS RYLGPARELL AELCSLTDHA AWNPKGGGVD VEANYSASWE GSNPGALLSS  120
MDLLALQRRK ATLLSMVQEV DRRYRRYREQ MRATELSFDA AAGAGAAQVY TRLAMRAMSR  180
HFRSLRDALV GQVTKAMGQG DTTGSLLAVV PGASRGDTPR LRVLAQCLRQ QRALFQKSGC  240
ASESYPWRPQ RGLPERAVAV LRSWLFEHFL HPYPNDVDKH ILARQTGLSR SQVSNWFINA  300
RVRLWKPMIE EMYAEEETKQ PGAIANGRGG GKPVVVIDDH HGNYTAAAWS TTGEISPHHR  360
LDSCGRDPSS CFVPAASIVP ADDHGQQLLF HSYLSSNNGG GGGAAAVSLT LGLQQRQRQP  420
AMMLGEAGEE EDVVLPYRNL MGSELLHGLA DPAVYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-15253311563Homeobox protein Meis2
4xrm_B3e-15253311563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast07G005400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557261.10.0homeobox protein BEL1 homolog isoform X1
TrEMBLI1H1Z10.0I1H1Z1_BRADI; Uncharacterized protein
STRINGBRADI1G51980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.17e-79TALE family protein