PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G217900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 336aa    MW: 37406.1 Da    PI: 6.8529
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G217900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF391e-124995349
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        ien+  r+vtf kRr g++K A+ L   ++a+va+++   + k++ +
  Brast06G217900.1.p 49 IENDEHRSVTFFKRRLGLFKGASDLAAITGARVAIVLETDNRKMHSF 95
                        9*******************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-93798IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.5913999IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-84161IPR002100Transcription factor, MADS-box
CDDcd001202.74E-144298No hitNo description
SuperFamilySSF554551.96E-1542110IPR002100Transcription factor, MADS-box
PfamPF003193.9E-164995IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-86176IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-87697IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MWDVLPYQYA VMILKKVLAI CSKHSLLSLI LIMLIGMPRR ERRSEVVYIE NDEHRSVTFF  60
KRRLGLFKGA SDLAAITGAR VAIVLETDNR KMHSFGTPSA DPITDAFLSG VPPQPLTDYA  120
VSTRISWLQS EVSRLDEENN TEEKRKKLFV QRVKEIQQEN PVMVANHLFS NEDDLNLEDL  180
TKLFNELLRV QQGTGSRLPQ LDHDHEQMTG GSSVSLNLIP PSVPSWGITE TPLLHPLGSD  240
LLPHQPLTPV PPPSVPQNTL APPFPVQVPQ MLQPTPLAST PATPSPYQLH ELPPSLDQSH  300
HSWPTLVVMP LPGKIRLAMT NGHILFLISH TTRAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G217900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230074.11e-143transcription factor RLM1
TrEMBLI1H3Q71e-138I1H3Q7_BRADI; MADS-box transcription factor 54
STRINGBRADI1G57420.11e-142(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.19e-15AGAMOUS-like 28