PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G192600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 213aa    MW: 23364.6 Da    PI: 8.2122
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G192600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.97e-10953145
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        +ri ++  r   f   +n ++ KA EL +LC+a+v+v+ +++  +
  Brast06G192600.1.p  9 ERIPDDVARRAAFRSLLNALMEKAGELATLCNAKVCVLAYAEGER 53
                        5888999999999999************************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.49E-12156IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.876154IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-4158IPR002100Transcription factor, MADS-box
PfamPF003192.3E-81053IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MPRQKMDLER IPDDVARRAA FRSLLNALME KAGELATLCN AKVCVLAYAE GERFQATPEI  60
EQYKKSVTQE DFLRQRVDKL KLQIKKSAPE NNKRETALLV HKAMAGNLQG GLEGLPIEKL  120
TSVGWMVHMR LKSLRELIAK RQAQAQEAPQ LQSLPAPAPT YQQEASQQDE GGLGALVFSD  180
ATGDDAVGTS GGFSWQWSAD RLGAPSSSYH PM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G192600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228259.21e-72agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3NSS44e-81A0A0Q3NSS4_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-14AGAMOUS-like 80