PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G260400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 432aa MW: 49060.7 Da PI: 6.4362

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G260400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.8	8.1e-25	108	204	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+ +v++Li+a ++++++ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ t++ + + + Brast05G260400.1.p 108 KWTDLMVKLLITAASYTGDDPGADLgggkkscammQKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGtTCRIVANPA 198 7*******************8634445667888********************************************7799999999 PP trihelix 81 yfdqle 86 ++d+++ Brast05G260400.1.p 199 LLDHMD 204 999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-18	106	230	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MEGNNLPSGN FMQDTVRKPM QMRSLNSGNQ GFNSQIPVLF PMPMNQVTDS DHLSELQFGE 60 RGKTDHHHHH HHQTKESMSD DEEHDLNEDA TDSHIGKGKK GSAWQRMKWT DLMVKLLITA 120 ASYTGDDPGA DLGGGKKSCA MMQKKGKWKA ISKVMGERGC NVSPQQCEDK FNDLNKRYKR 180 LTDILGRGTT CRIVANPALL DHMDNLSDKL KDDAKKILSS RHLFYEEMCS YHNNNRVSLP 240 EDPALQRSLQ LALRCKEEND LRRGVSGDAD EDDQTADSDS EEDNDEEHHT THSSKGPLPM 300 HKRMRHMTDH EDVGFGNSSS SHGCSEKSNL HGIALDINKV FPDGTSSALA QKDLALQLAQ 360 LEKYRFQIEV QELELAEQRF KWEQFCKKKD RELERMGSEN EQMRVDNKRL ALEVRRKELE 420 LELKLQGNGN H*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MEGNNLPSGN FMQDTVRKPM QMRSLNSGNQ GFNSQIPVLF PMPMNQVTDS DHLSELQFGE  60
RGKTDHHHHH HHQTKESMSD DEEHDLNEDA TDSHIGKGKK GSAWQRMKWT DLMVKLLITA  120
ASYTGDDPGA DLGGGKKSCA MMQKKGKWKA ISKVMGERGC NVSPQQCEDK FNDLNKRYKR  180
LTDILGRGTT CRIVANPALL DHMDNLSDKL KDDAKKILSS RHLFYEEMCS YHNNNRVSLP  240
EDPALQRSLQ LALRCKEEND LRRGVSGDAD EDDQTADSDS EEDNDEEHHT THSSKGPLPM  300
HKRMRHMTDH EDVGFGNSSS SHGCSEKSNL HGIALDINKV FPDGTSSALA QKDLALQLAQ  360
LEKYRFQIEV QELELAEQRF KWEQFCKKKD RELERMGSEN EQMRVDNKRL ALEVRRKELE  420
LELKLQGNGN H*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G260400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003578873.1	0.0	uncharacterized protein LOC100835589
Refseq	XP_010238688.1	0.0	uncharacterized protein LOC100835589
TrEMBL	I1IU47	0.0	I1IU47_BRADI; Uncharacterized protein
STRING	BRADI4G41830.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-87	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Brast05G260400.1.p