PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G177900.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 290aa    MW: 31878.7 Da    PI: 5.8299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G177900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09121168455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+  Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Brast05G177900.3.p 121 SHSLSERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 168
                         799***********************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.43E-11115172No hitNo description
SuperFamilySSF474593.14E-17115184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16117181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6121168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-10123173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAGFSHLPQQ MEYGLTNAGS FMFCHGHVVA ASANPEDAAS LEISSGVLDT PPMATASVEK  60
KRRPCREEHT VSLNSAHSPK EPKENTRKRG GKKQSKEMDE EEEEPKGYIH VRARRGQATD  120
SHSLSERVRR ERISERMRML QALVPGCDKV TGKALILDEI INYVQSLQNQ VEFLSMRIAS  180
LSPVLYGFGM DRDVAFSDQL QIEGMFHEAA AMPSDSAINR SSTSPAPSQA IMDTDTSSSP  240
HYSLQGTNGS MSLSQDNGSS IGYMMQTVGE PKEELFNQVV FSNYMCSFQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G177900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238346.20.0transcription factor bHLH78 isoform X2
TrEMBLA0A0Q3LEB10.0A0A0Q3LEB1_BRADI; Uncharacterized protein
STRINGBRADI4G34870.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-36bHLH family protein