PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G243600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 194aa MW: 20453 Da PI: 11.1205 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.1 | 8.7e-05 | 24 | 47 | 6 | 29 |
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 + +Er RR+++N +++L l+ Brast04G243600.1.p 24 KTVERVRRNQMNALYSRLDNLVRA 47 679***************999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.98E-7 | 24 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-7 | 24 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MEMPPPPPPP PRRPAAAGGK PDRKTVERVR RNQMNALYSR LDNLVRAGGG APSPTPAATR 60 PERLGEAAAY ITQTAERVER LKERKRELNA RATTEVQAGS GSGSSQQLEV QAQHLGSGLH 120 AILVTGGPPS DDGASFHRAV RAVEEAGGGV QNAHFSVVAA RAVYTIHALV GEQPGSIERV 180 VQRLKEAVRG NGR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G243600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236341.1 | 8e-86 | transcription factor bHLH162 | ||||
TrEMBL | I1HZ05 | 2e-84 | I1HZ05_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G08810.1 | 3e-85 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-07 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G243600.1.p |