PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G083300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 361aa    MW: 40421.6 Da    PI: 7.9089
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G083300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.7e-063554626
                        -SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                        C  f+++G C+yG+ C++ H+
  Brast04G083300.1.p 35 CA-FYQNGVCSYGSHCRYEHV 54
                        66.5566***********997 PP
2zf-CCCH19.12.4e-061431581126
                         GTS--TTTTT-SS-SS CS
             zf-CCCH  11 rtGtCkyGdrCkFaHg 26 
                         + GtC+yG+ C+ +Hg
  Brast04G083300.1.p 143 AAGTCPYGEECPQMHG 158
                         67*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.573128IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.612956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-53053IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-43155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.573133160IPR000571Zinc finger, CCCH-type
SMARTSM003560.4134159IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.83E-13186266No hitNo description
Gene3DG3DSA:3.30.40.101.5E-11195261IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00115201262No hitNo description
PfamPF000971.1E-7202259IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001848.3E-7202259IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.371202260IPR001841Zinc finger, RING-type
PROSITE patternPS005180226235IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.052289317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.324289318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSNRSVCKFF VHGACFKGDY CQFSHDWNDQ SNNVCAFYQN GVCSYGSHCR YEHVEVSYEH  60
APPAAAVAAS NSYQILSSSR CLICEEDRIA VSNQIQQTCK SASALSAHQP DRREDNNSVT  120
SRRTVHDQAS LPPAHLPICS SAAAGTCPYG EECPQMHGDL CTTCGKQCLH PYRPSESGVH  180
IKLCKRNNKR LETLKKSEEI ECSVCLDRVL SKSTAAEKRF GLLPECDHAF CITCIRKWRS  240
SSLTSSMDID STVKACPICR KVSYYVIPSS TWYSSKEEKQ EIIDGYKAKL KSIDCKYFDF  300
GRDTCPFGGR CFYKHAYSDG RLEEVAPAIP PPRLHFHADD GSRERVRNIG FAYLLSRLHL  360
*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G083300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3720370.0AK372037.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2145F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570254.10.0E3 ubiquitin-protein ligase makorin isoform X2
SwissprotQ5ZA071e-151C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLI1ID940.0I1ID94_BRADI; Uncharacterized protein
STRINGBRADI3G53502.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-116C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]