PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G215300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 300aa    MW: 31864.6 Da    PI: 7.0994
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G215300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY863.3e-27113173259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+r+++dp +++++Y+g+H+++
  Brast03G215300.1.p 113 DDGHSWRKYGQKDILGAKHPRGYYRCTHRisqGCAATKQVQRADHDPALFDVVYHGDHTCT 173
                         7***************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-28105173IPR003657WRKY domain
PROSITE profilePS5081122.825107170IPR003657WRKY domain
SuperFamilySSF1182901.1E-24110173IPR003657WRKY domain
SMARTSM007748.0E-37112174IPR003657WRKY domain
PfamPF031063.0E-26113172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEGKGGGQGE QLVSELCRVQ GLVRQLELHL QAPDAAGSVE RCRRLAAQIV ALTDRSIAFV  60
AAAAAATPPS GTPSPLSGVS DQQQPFRQPS TKKRKATARW TSQVRVSAEG PGDDGHSWRK  120
YGQKDILGAK HPRGYYRCTH RISQGCAATK QVQRADHDPA LFDVVYHGDH TCTGAGAGRI  180
RQPPPPDQQH NPHAQSLLQS LSAGLTVDTA SLPHASPMTP PSMASPVPSD SNGGLTTTPM  240
SAPYTASAYT DWPSDRDLQE VVSALTAVSG PAPAMYVDDF MAYHFEFDPT FGVDLPSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-22113172968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G215300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574419.11e-170probable WRKY transcription factor 53
TrEMBLI1I6P01e-169I1I6P0_BRADI; Uncharacterized protein
STRINGBRADI3G34850.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-34WRKY family protein