PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G019400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 366aa    MW: 38771.8 Da    PI: 7.0634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G019400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.3e-10106131127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC+ f++ GtC+y  +C+FaHg+
  Brast03G019400.1.p 106 FKTKLCCKFRA-GTCPYVTNCNFAHGM 131
                         69*********.*************95 PP
2zf-CCCH18.14.6e-06179204126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         yk + C+ f+    C+yGd C+F H+
  Brast03G019400.1.p 179 YKGRHCKKFYTEEGCPYGDACTFLHD 204
                         78888********************7 PP
3zf-CCCH43.35.8e-14244269126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C+ +  tG+C++G++C+FaHg
  Brast03G019400.1.p 244 WKTRICNKWEMTGYCPFGSKCHFAHG 269
                         8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-14103138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-8103136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028105132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014105131IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-9177206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7177206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629178206IPR000571Zinc finger, CCCH-type
SMARTSM003560.3178205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-17240273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-10240274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422243271IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9243270IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11244269IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDYTNAIHII PDAPGPEAWA NNSAAPPGGD SGIWATEDDY SQWNADPGIT GGGGYGGDRN  60
SSQPRSRDGS EQPPLGKKPR GGGPSGGGGG DAGSTSKSRA IGKMFFKTKL CCKFRAGTCP  120
YVTNCNFAHG MEELRKPPPN WQEIVAAHEE ATEQREEHQI PIMTSSSVAP SDSVSGRAYK  180
GRHCKKFYTE EGCPYGDACT FLHDEQSKAR ESVAISLSPS VGGGSYNSPT AAANGPTILK  240
PSNWKTRICN KWEMTGYCPF GSKCHFAHGA AELHNYGGGL VDIDGRDIAS TPDSKQAALS  300
AKAPAETAAA STAAPPHADV YHLGIQSQRS TLASQRSGQL PRPIQKWKGP DKISRIYGDW  360
IDETD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G019400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573458.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLI1I1E00.0I1I1E0_BRADI; Uncharacterized protein
STRINGBRADI3G16377.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-104C3H family protein