PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G292100.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 317aa MW: 34865.2 Da PI: 6.1726 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.8 | 1.3e-10 | 144 | 192 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Brast02G292100.7.p 144 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 192 58**************************....899*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.64E-11 | 139 | 196 | No hit | No description |
SuperFamily | SSF47459 | 9.55E-17 | 139 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.447 | 141 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 141 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-8 | 144 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 147 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MYSGQQSDQG PSVNSGAEFL DGNWNSVAMH PKMGYNSGPY GFQAYSMELE ERPGPYRSSS 60 GTFSQNIQLS VERSSVVKKR KGVDDCTPLL NPSASSRMQT ERDSLEEENK KISPKTQSKE 120 DSSDGDATKE DYVHIRAKRG QATNSHSLAE RLRRKKISER MKLLQDLVPG CSKITGKAVM 180 LDEIINYVQS LQRQVEFLSM KLATVNPELG FDIEQILSKQ MMISQGRHLA FCGADPGSST 240 LIAHFNQGIM QPDMMCNASN PAGVLHGTFH EISAMNQMPE MWEALQNIPD MNFNPAVAAD 300 SSTNNAGISG TMKIEQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G292100.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360959 | 0.0 | AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560304.1 | 0.0 | transcription factor bHLH74 isoform X1 | ||||
TrEMBL | I1GNR3 | 0.0 | I1GNR3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G09960.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 2e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G292100.7.p |