PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G409800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23758.3 Da PI: 9.7571 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.7 | 5e-09 | 28 | 77 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +e+Er RR++++ +L +l+Pk+ ++ ++ + L +A YIk+L Brast01G409800.1.p 28 RKEIERERRQHMKGLCLKLASLIPKQHYSSADTMTQLSSLDEAASYIKKL 77 589**********************76788888***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.976 | 23 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-11 | 26 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-12 | 28 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-6 | 29 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-5 | 29 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEEVKGNKGK GVRRSKLKAK SSGMTMERKE IERERRQHMK GLCLKLASLI PKQHYSSADT 60 MTQLSSLDEA ASYIKKLKDR VDELRQKKNS AQAMASLREV GGASKMRDRG MLSELEVEEA 120 GEALSASLPV VEVRHHDDSS MDVVLICSEK RPLKFHEVIT ILEEEGAEVI NANYSIGDHK 180 IFYTIHSRAF SSRIGIEISR VYERLRALVR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G409800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565225.1 | 1e-124 | transcription factor bHLH162 | ||||
TrEMBL | I1HB71 | 1e-122 | I1HB71_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G00720.1 | 1e-123 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 5e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G409800.1.p |