PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G354600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C3H

Protein Properties

Length: 383aa MW: 41048 Da PI: 7.6428

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G354600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.7e-08	119	139	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C +aHg Brast01G354600.1.p 119 ACPDFRK-GGCKRGDACEYAHG 139 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.4E-5	114	140	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.103	115	141	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.9E-5	118	141	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-6	119	139	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	23	149	172	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MMMMSEGVSV PPWGSLPVSA GVDAGGCGGD DMSPHIFAAL RHFLPCNDVA GFGADDEDEA 60 AAMAAAVDAY GGDEFRMYDF KVRRCVRGRS HDWTECPFAH PGEKARRRDP RKYHYSGTAC 120 PDFRKGGCKR GDACEYAHGV FECWLHPARY RTQACKDGTA CRRRVCFFAH TREQLREMPP 180 PQQHSSPRST PLSPLAESYD GSPLRRQVFE SYLNNKGIVS SSPTSTYLSS PPKSPPSESP 240 PLSPDGAAAI RRGSWPGVGS PVNDVLTSFR QLRVGKAKSA PSGGWTYPAS AAVAYGSPKA 300 AGLYSLPSSP MATPTTTSGF MANLEPLSLC FMDEDEPVQR VESGRALREK VFERLSRDGT 360 PSGGAAAGVG GPDVGWVSDL IN*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MMMMSEGVSV PPWGSLPVSA GVDAGGCGGD DMSPHIFAAL RHFLPCNDVA GFGADDEDEA  60
AAMAAAVDAY GGDEFRMYDF KVRRCVRGRS HDWTECPFAH PGEKARRRDP RKYHYSGTAC  120
PDFRKGGCKR GDACEYAHGV FECWLHPARY RTQACKDGTA CRRRVCFFAH TREQLREMPP  180
PQQHSSPRST PLSPLAESYD GSPLRRQVFE SYLNNKGIVS SSPTSTYLSS PPKSPPSESP  240
PLSPDGAAAI RRGSWPGVGS PVNDVLTSFR QLRVGKAKSA PSGGWTYPAS AAVAYGSPKA  300
AGLYSLPSSP MATPTTTSGF MANLEPLSLC FMDEDEPVQR VESGRALREK VFERLSRDGT  360
PSGGAAAGVG GPDVGWVSDL IN*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269\|PubMed:16778011}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G354600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564747.1	0.0	zinc finger CCCH domain-containing protein 2
Swissprot	Q9FU27	1e-179	C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBL	I1HCW5	0.0	I1HCW5_BRADI; Uncharacterized protein
STRING	BRADI2G05750.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	8e-69	C3H family protein

Link Out ? help Back to Top
Phytozome	Brast01G354600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kislov VV,Hayashi M Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories. J Chem Phys, 2007. 126(20): p. 204310 [PMID:17552765] Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T Anti-angiogenic function of tocotrienol. Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6 [PMID:18296349]