PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G294000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 240aa    MW: 26423.8 Da    PI: 7.3629
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G294000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.12.2e-131050242
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        ri n++ r   f +  n + KKA+ELS+LC ++ +vi++++
  Brast01G294000.1.p 10 RIPNDTARRAAFRNHHNDLVKKASELSTLCKVNTCVIVYGE 50
                        899************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.316150IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-6160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-15391IPR002100Transcription factor, MADS-box
PfamPF003198.2E-121050IPR002100Transcription factor, MADS-box
CDDcd002663.04E-151060No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MARKNATPRR IPNDTARRAA FRNHHNDLVK KASELSTLCK VNTCVIVYGE GEAQPEVWPS  60
IDEAVPILHR YKAMTQEGFL RQHMDKLREQ VHKARHENRE LHTACLVHNA MLGRLPGLEG  120
LTVEEVANVG WMVQMKLKSI GDRIANLQAQ AGLQLHAQPA PSLAYGQQAQ QQETWLDVVR  180
PPLVHGGFTG GNDASSSMAD NMASTSASGG FSCQWPDDTG DSSSSFHPNF IYFVVAWVT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G294000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565667.11e-124agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3MHL81e-124A0A0Q3MHL8_BRADI; Uncharacterized protein
STRINGBRADI2G11150.11e-64(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-21AGAMOUS-like 80