PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G278400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 535aa    MW: 57083 Da    PI: 6.5378
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G278400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.36.5e-21110224186
            trihelix   1 rWtkqevlaLiearremeerlrrgk............................lkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                         +Wt+ +v++Li ++ + +++ +  +                            +kk++W++vs+ m e+gf++sp+qC++k+++lnkryk+
  Brast01G278400.1.p 110 KWTDAMVRLLIMVVYNAGDDGEGVAaaggggraaaashghghahgsaaaahaqQKKGKWKSVSRTMGEHGFTVSPQQCEDKFNDLNKRYKR 200
                         79999999999999955555553222334455555666666666666677777************************************** PP

            trihelix  64 ikegekkr.tsessstcpyfdqle 86 
                         + +  +++ ++ ++++ +++d ++
  Brast01G278400.1.p 201 VVDLLGRGkACAVVESPALLDAMD 224
                         ******996699999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.6E-17108249No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MERGDGAGGG GGMGPRGASA AMLGMGIQQF VSPPHAAAPV FQQPEHLHGG VFGQHHQPVP  60
APPSYSPYPA VPVRAGGHHE EEVTGHGAGN DGVAAQQQQQ QPGGLWSRMK WTDAMVRLLI  120
MVVYNAGDDG EGVAAAGGGG RAAAASHGHG HAHGSAAAAH AQQKKGKWKS VSRTMGEHGF  180
TVSPQQCEDK FNDLNKRYKR VVDLLGRGKA CAVVESPALL DAMDELTPRA KEEARKLLSS  240
KHLFFREMCN YHNSSHAPAA AVTVASHHGT EGAACFHHPQ PAGASSANAF QVVAQLAPSP  300
AMVNSSTRTE GDEDDDDSEN AHPPTSNDVE GMDEDVLDDE EEQAPGIKTK HRSSNGFPKR  360
RRGESSTMAA ADEEEEEEDG NNNNSNKEGE APSSAGLQQL QSELAAAGAG GDPEQARRWM  420
RRRALAVEEQ LLACDCREYK LHRQRLKWER FCAAKERDME LAKLRNERAR IDGRRMLLMI  480
QHKEMDLLRG SAAAAAEANN SSSVDHHPRQ TQTPLAAFQQ QLGSSPSTAG GHHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G278400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2890281e-83AK289028.1 Oryza sativa Japonica Group cDNA, clone: J090090M16, full insert sequence.
GenBankAP0034141e-83AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBankAP0039211e-83AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBankAP0149571e-83AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-83CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753555.10.0uncharacterized protein LOC100835008
TrEMBLA0A0Q3IUP40.0A0A0Q3IUP4_BRADI; Uncharacterized protein
STRINGBRADI2G12030.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-51sequence-specific DNA binding transcription factors