PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G234500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 193aa    MW: 21076.3 Da    PI: 6.872
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G234500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30116174159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +dDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY+g H+h+
  Brast01G234500.1.p 116 MDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCRVKKRVERERDDARFVITTYHGVHDHP 174
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-32104176IPR003657WRKY domain
SuperFamilySSF1182903.79E-28109176IPR003657WRKY domain
PROSITE profilePS5081132.145111176IPR003657WRKY domain
SMARTSM007743.5E-35116175IPR003657WRKY domain
PfamPF031066.1E-24117174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSSSLLSMSP VDEIGGYVDD GSDDMTAGYL SFDIDEYYLP EADHAFYAGQ QAPADPPAGH  60
SLQADADSYK SGAKAASSEG LSYHDKISSH QSLTSGGGAG KSCKIAFKTR SEVEVMDDGY  120
RWRKYGKKMV KNSPNPRNYY RCSSEGCRVK KRVERERDDA RFVITTYHGV HDHPAPLPPR  180
GCAGYSLARP QY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-24104176274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G234500.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8274032e-98KR827403.1 Triticum aestivum WRKY52 transcriptional factor mRNA, complete cds.
GenBankKT7289102e-98KT728910.1 Triticum aestivum clone LKc002 WRKY protein mRNA, partial cds.
GenBankKT8658772e-98KT865877.1 Triticum aestivum clone KL04 WRKY mRNA, partial cds.
GenBankKT8658782e-98KT865878.1 Triticum aestivum clone KL05 WRKY mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566817.11e-127probable WRKY transcription factor 75
TrEMBLA0A0Q3R4M91e-126A0A0Q3R4M9_BRADI; Uncharacterized protein
STRINGTraes_3B_E408A7B56.16e-61(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-38WRKY DNA-binding protein 50