PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G002800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 297aa    MW: 31847.4 Da    PI: 4.9558
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G002800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.11.9e-221866149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        kri+++  rqv fskRr+g++KKA+ELSvLC+a+va ++fs+ gk + +
  Brast01G002800.1.p 18 KRIDSEEARQVCFSKRRAGLFKKASELSVLCGAQVAAVVFSPAGKAFSF 66
                        79******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-341069IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-271082IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.0441070IPR002100Transcription factor, MADS-box
CDDcd002651.86E-361177No hitNo description
PRINTSPR004041.5E-191232IPR002100Transcription factor, MADS-box
PfamPF003193.4E-251966IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-193247IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-194768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAPTRRRPSM GRQKIAIKRI DSEEARQVCF SKRRAGLFKK ASELSVLCGA QVAAVVFSPA  60
GKAFSFGHPS VDVVVDRLLA TLAANAPGSA MAAAAAGKTE LGAEEEQRLL ELNREYGELR  120
AMMEKEKLRK ERAEAETKRV LAEGSSPAAA WLDADLGDLP EAELLAFQAA LMEVKRAVQV  180
RADDVLREAL NADRNAAAAR INGVYEVGGS SSSSNNNNNS NGAMEEMMMN NMLQQQMNMN  240
MMQQMDLMAQ QLPPQAPPGL MGQLPPPPGM GFPETMDLPP PDFGPDGAGF FGPPPY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G002800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567547.31e-134agamous-like MADS-box protein AGL23
TrEMBLA0A0Q3GL471e-132A0A0Q3GL47_BRADI; Uncharacterized protein
STRINGBRADI1G20090.13e-81(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-27AGAMOUS-like 61