PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g24360.2.p
Common NameBRADI_5g24360, LOC100838963
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 492aa    MW: 52865.4 Da    PI: 6.3426
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g24360.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.4e-15142201155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Bradi5g24360.2.p 142 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 201
                       57*******************666664477446*************************98 PP
2AP248.12.9e-15244295155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Bradi5g24360.2.p 244 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 295
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.34E-17142210IPR016177DNA-binding domain
CDDcd000182.37E-21142211No hitNo description
PfamPF008476.2E-12142201IPR001471AP2/ERF domain
PROSITE profilePS5103219.216143209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-16143210IPR001471AP2/ERF domain
SMARTSM003804.2E-28143215IPR001471AP2/ERF domain
PRINTSPR003677.8E-6144155IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18244304IPR016177DNA-binding domain
CDDcd000187.89E-24244304No hitNo description
PfamPF008476.2E-10244295IPR001471AP2/ERF domain
PROSITE profilePS5103219.348245303IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-18245303IPR001471AP2/ERF domain
SMARTSM003805.7E-33245309IPR001471AP2/ERF domain
PRINTSPR003677.8E-6285305IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDMDAAQQQH HHYPWLNFSL AHHCGMEEEE RGAAAELAAI AGAAPPPKLE DFLGGGGGNG  60
NGGGGGPVVP AGAAAEMYES ELKFLAAGGF LGSGGTGTSP AAPPPVVALE EQAAEAKLAL  120
PLVAAPAPET KKAVDSFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG  180
GYDKEEKAAR AYDLAALKYW GASTTTNFPV ADYENELEEM KHMTRQEFVA SLRRKSSGFS  240
RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTEE EAAEAYDIAA IKFRGLNAVT  300
NFEIGRYNVE SISSSNLPIG TASGANRGSK CALEPTPVIS DVDAPSIAPH SLAFTALPMK  360
YNQHENDYLS FLAMQHHQQG NLQGLGYGLY SSGVNLDFAN AHNAATMTAA QCYGNGGGSL  420
HHQQQQEQDH HQQQQQQQDQ EQNSNGCPSS VPFATPMAFS GGTYESSVTP SPFGYYSPNM  480
AAFQTPIFGM E*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g24360.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3653650.0AK365365.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033L15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580707.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-136AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0Q3HA010.0A0A0Q3HA01_BRADI; Uncharacterized protein
STRINGBRADI5G24360.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-123AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]