PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g14130.1.p
Common NameBRADI_5g14130
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 397aa    MW: 45349.4 Da    PI: 9.6444
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g14130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.83.6e-1320104490
              FAR1   4 neYAkevGFsvrkskskks......krngeitkrtf.vCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       n Y+ evGF +r s+sk+       k++    + ++ vC +eg++++++         +++ r+gCka++++ +++d  w++++++leHnH+l
  Bradi5g14130.1.p  20 NLYSWEVGFGIRYSRSKSYkcksgpKKDVVYQTLQYiVCGCEGYPRKKN---------TSSVRCGCKAMIRLLRTDDYGWYIKDCKLEHNHNL 103
                       78*********99887765556665444444443433799999888765.........459*******************************9 PP

              FAR1  90 a 90 
                       +
  Bradi5g14130.1.p 104 S 104
                       7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-1018104IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MQMMLGLLQR LEAEAYEYIN LYSWEVGFGI RYSRSKSYKC KSGPKKDVVY QTLQYIVCGC  60
EGYPRKKNTS SVRCGCKAMI RLLRTDDYGW YIKDCKLEHN HNLSQNNGEK MCWPSHKHID  120
RYTRELVRNL RENNVPLTKV YSILGGVVLK IGWPIEKHAA TIYTSAMLQL FSDHIFDSAA  180
YNVIEVMLRQ GVDKIPEGHI LKRWTKDATD VLPDHLVHLQ KDRGSARSQS YRHATLHVAA  240
LELAAIGDKN VDCYHYVLKY MKDGTKKFGE MYQYTDGRSL HELLVAPVVN LQVPQASDVV  300
PRQIHTGVLA PVRKCPEGRP TNTRDKPAYE LKRKRMKFRT VCKLSGHNRS ECKANQDKPA  360
SKRSDPKCGK CVLVGHRMNV CASSVDVQHI EYQLGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332338RKRMKFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g14130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317341.12e-97protein FAR1-RELATED SEQUENCE 5-like
TrEMBLI1IZ430.0I1IZ43_BRADI; Uncharacterized protein
STRINGBRADI5G14130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.29e-07FAR1 family protein