PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g41430.1.p | ||||||||
Common Name | BRADI_4g41430, LOC100827829 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TCP | ||||||||
Protein Properties | Length: 415aa MW: 42932.6 Da PI: 6.5095 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.2 | 2.1e-40 | 105 | 230 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg. 88 a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ s+s+ s + Bradi4g41430.1.p 105 AVAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANFSslnitR-----ASGSSASVSa 192 689******************************************************************888544321.....2222122222 PP TCP 89 .....................................k 89 + Bradi4g41430.1.p 193 aaraatpfpalalhphahhhhdmstmlgyhhhhlippQ 230 33445555555555555555555666554433333331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.5E-37 | 111 | 265 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.31 | 111 | 165 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MEHGGGGAGS GGGGAAPSSS NSGGGGSGTS GSRGGGGDHH PHHPFYYAGP SVAAPNNNSN 60 NVQQQQPQQF MGSLAITTAA VAADQAPANK EKAVAAPVTP SSSGAVAKRP SKDRHTKVDG 120 RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP AILAATGTGT IPANFSSLNI 180 TRASGSSASV SAAARAATPF PALALHPHAH HHHDMSTMLG YHHHHLIPPQ PQPQQQEPPH 240 DPNSSGGGGF MRKRYREDLF KEDDERQDPK AREQQQPAAM WAVAPNSAAP GGAFWMLPVS 300 ASQAAGARPT EQPMWSFGGS GGGGTSTVQA PLQFMSRVNY PTAAGMGGSP ADTNIGMLAA 360 LNYSRGGTED QQEQQHQQPE MEQQRGGNEG EEEEGGDDSG GEEDHGANNN NSSQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g41430.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355813 | 2e-88 | AK355813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1026F19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578849.1 | 0.0 | transcription factor PCF3 | ||||
Swissprot | Q53PH2 | 1e-69 | PCF3_ORYSJ; Transcription factor PCF3 | ||||
TrEMBL | I1IU01 | 0.0 | I1IU01_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G41430.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4934 | 26 | 52 | Representative plant | OGRP4591 | 10 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35560.1 | 7e-45 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g41430.1.p |
Entrez Gene | 100827829 |