PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi4g31785.1.p | ||||||||
Common Name | BRADI_4g31785 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 171aa MW: 18815.9 Da PI: 10.0412 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.8 | 1.6e-14 | 1 | 40 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+ r tf +R +lKKA+EL +LC+++ +vi++++ Bradi4g31785.1.p 1 IPNDATRRATFKNRHDVLLKKASELAILCNIKSCVIVYGK 40 568999********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 1.6E-12 | 1 | 40 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.32E-15 | 1 | 72 | No hit | No description |
PROSITE profile | PS50066 | 12.503 | 1 | 39 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.4E-4 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-15 | 1 | 84 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
IPNDATRRAT FKNRHDVLLK KASELAILCN IKSCVIVYGK GEAQPEVRSS VDEVVPILHR 60 YKAMPEIGRC KKTVTQEDFL RQRMDKLKKQ VHKAVQENRE RGTAFLVHKA MLGHLPRLEG 120 LTVEEVTNVG WMVQMKLKSL GDRIARSAGG TLATCSASSL CDVCATGTTA * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 84 | 89 | DKLKKQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi4g31785.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF469310 | 9e-36 | KF469310.1 Brachypodium distachyon MADS-box transcription factor 15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314493.1 | 5e-79 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0Q3IWN5 | 1e-123 | A0A0Q3IWN5_BRADI; Uncharacterized protein (Fragment) | ||||
STRING | EMT02802 | 9e-53 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-21 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi4g31785.1.p |