PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g24750.1.p
Common NameBRADI_4g24750, LOC100846758
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 423aa    MW: 47834 Da    PI: 7.4237
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g24750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.31.8e-22111207186
          trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                       +W  ++v++Li+a++++ e+ + +           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ + + +++++ + +++
  Bradi4g24750.1.p 111 KWAGSMVKLLITAVSYTAEDPGPDLncgkrsgtiaQKKGKWKAISKVMCERGCNVSPQQCEDKFNDLNKRYKRLTDILGCGiACDVVGNPALL 203
                       7**************88888886522344555566*****************************************99988678887777777 PP

          trihelix  83 dqle 86 
                       d ++
  Bradi4g24750.1.p 204 DGMD 207
                       7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-17109233No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEGSSLPPGN PMQVTPYGSL NGHGNSMQMH APCSGKQPFN QSLMLGSFAM PVNRIQDPDR  60
LPRFQFGEHG KVDHHQHSHR SKNCLSDEEE HDMTEDVGGK GKNGSAWHRV KWAGSMVKLL  120
ITAVSYTAED PGPDLNCGKR SGTIAQKKGK WKAISKVMCE RGCNVSPQQC EDKFNDLNKR  180
YKRLTDILGC GIACDVVGNP ALLDGMDNLS DKMKEDARKI LSSKHLFYEE MCSYHNNNRV  240
SLPEDLEFQH SLQLALRCKE DRGPRKDTSG EDQSADSDYE ENDEWHQAVR TNMNKRMCHT  300
VDHVDVGFVP SSSNNGSGRF DPHGITLDIN KGLPDGTNLP SLQKDLASQA LELQERRLQI  360
EVNELAITKR RLKWERFKKQ TEREMKRMEL ENERMMIMNK RSQLLLRHKE LELMAKGDPN  420
HA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g24750.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577819.10.0uncharacterized protein LOC100846758
TrEMBLI1IN990.0I1IN99_BRADI; Uncharacterized protein
STRINGBRADI4G24750.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.16e-88sequence-specific DNA binding transcription factors