PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g02670.2.p
Common NameBRADI_4g02670
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 263aa    MW: 27679.5 Da    PI: 4.3425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g02670.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.1e-10991381155
                       HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       rRR +i +++ +L++l+P +      K + a++Le++++Y+ksLq
  Bradi4g02670.2.p  99 RRRCKIAERLKTLQQLVPGC-----DKSNQASTLEQTIQYMKSLQ 138
                       8******************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.46288137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-695143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-899138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1099144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-1199141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.38E-999141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDGQDPWWWR PATDDYHDDM LFDFSSDSDP LELALGDEGE AVAAGQPVVP CDRSPPPQVT  60
PPSEDMMAAW LYPIVSGEDH VSDDLKSLMA EETIRPAVRR RCKIAERLKT LQQLVPGCDK  120
SNQASTLEQT IQYMKSLQQH LVRGMNMRPP PQAGAAAAAV YPVVMPPAMA AAAVAVPMPP  180
ASAVVATAGM VPYGGLAPAP MLPYLAMVMH AAAAPFYPPA AQAAASAAPP DAAGGQCSVA  240
MEQQQKEEKG SYTTGSSAGY IS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g02670.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442458.19e-31transcription factor APG
TrEMBLA0A0Q3HCX80.0A0A0Q3HCX8_BRADI; Uncharacterized protein
STRINGBRADI4G02670.11e-138(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Representative plantOGRP10440410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-12bHLH family protein