PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g53060.2.p
Common NameBRADI_3g53060
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 310aa    MW: 32018.8 Da    PI: 5.9718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g53060.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.46.9e-10224265955
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++RR++i +++ +L+e++P+      +K++ +++LekA+ Y+k Lq
  Bradi3g53060.2.p 224 AKNRREKISERLRTLQEMVPNG-----TKVDMVTMLEKAISYVKFLQ 265
                       69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.402215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-13216273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.46E-13217269No hitNo description
SuperFamilySSF474591.05E-13218276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-12221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-7224265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MALVREPMVL YDGGFDASEA SAFDSIGCFG HGHGHDALLG GVDAAALFGG YAHDEPAGAS  60
ASAYVKDGSH WAGVGASVLA FDRAARGHGA QAMATAAAQE EEECDAWIDA MDEDNGEAAP  120
APSIGFDPAT GCFSLTQRPG AGARRPFGLL FPSASGGAPS PDSAAPAPAS RGSQKRPSAG  180
IARAQDAEPR ASKKQCGASR KTTAKAKSPA PAITSPKDPQ SLAAKNRREK ISERLRTLQE  240
MVPNGTKVDM VTMLEKAISY VKFLQLQVKV LATDEFWPAQ GGMAPEISQV KEALDAILSS  300
QRGQFNCSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g53060.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756070.20.0transcription factor APG
TrEMBLA0A0Q3QGZ10.0A0A0Q3QGZ1_BRADI; Uncharacterized protein
STRINGBRADI3G53060.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.18e-47ROOT HAIR DEFECTIVE6