PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g45590.1.p | ||||||||
Common Name | BRADI_3g45590, LOC100834525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 347aa MW: 39008.7 Da PI: 7.4382 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 66 | 88 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H +H Bradi3g45590.1.p 66 CSydGCGKTFVDAGALRKHAHVH 88 78889**************9887 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.5e-05 | 93 | 117 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ Cgk F ++s LkrH H Bradi3g45590.1.p 93 YICHydGCGKKFLDSSKLKRHFLIH 117 89*******************8877 PP | |||||||
3 | zf-C2H2 | 18.2 | 6.9e-06 | 124 | 147 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 C+ Cgk Fs nLk H++tH Bradi3g45590.1.p 124 FCTyeGCGKAFSLDFNLKAHMKTH 147 688889*****************9 PP | |||||||
4 | zf-C2H2 | 17.9 | 8.8e-06 | 153 | 178 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp Cg++F++ s L+ H rt H Bradi3g45590.1.p 153 HPCPypECGRRFTQESKLRAHFRTqH 178 689999*****************999 PP | |||||||
5 | zf-C2H2 | 12.1 | 0.00062 | 217 | 242 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C k + + + L+ H+++ H Bradi3g45590.1.p 217 YVCPydGCAKAYIHEYKLNLHLKKeH 242 99*********************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.1E-14 | 59 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.928 | 64 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0018 | 64 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.83E-8 | 67 | 117 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.3E-14 | 91 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.817 | 93 | 122 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0024 | 93 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 95 | 117 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.83E-14 | 104 | 157 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.0E-19 | 114 | 148 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.572 | 123 | 152 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 123 | 147 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 125 | 147 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0057 | 153 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.697 | 153 | 182 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.9E-8 | 153 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.59E-6 | 154 | 177 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 155 | 178 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-8 | 209 | 239 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.59E-6 | 212 | 239 | No hit | No description |
SMART | SM00355 | 0.012 | 217 | 242 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.58 | 217 | 247 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 219 | 242 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MQAAAPRLRH RWVKEWIPQD LVIAGGPCAL YKWVREDRLS ALKAKDKEQG ADTAKPEPTT 60 EVLFLCSYDG CGKTFVDAGA LRKHAHVHGE RQYICHYDGC GKKFLDSSKL KRHFLIHTGE 120 KNFFCTYEGC GKAFSLDFNL KAHMKTHFAD NYHPCPYPEC GRRFTQESKL RAHFRTQHEK 180 NPGMPAAMNR NALGDHPHNT VKPPPVTPPV PSAERPYVCP YDGCAKAYIH EYKLNLHLKK 240 EHPNHFSDAG AQAGPSRSTA SKSSRRSRPS ATAKMPLPKI PKRGAEYTTP SPAINIAEEH 300 QWPRKVLYDD DSEETEEEGD KPADMGWGRI AASSDDDDDE ETEDEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 1e-34 | 59 | 177 | 8 | 122 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g45590.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235528.1 | 0.0 | zinc finger transcription factor YY1 isoform X2 | ||||
Swissprot | Q2V3L3 | 1e-101 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | I1IAF9 | 0.0 | I1IAF9_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G45590.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2094 | 38 | 99 | Representative plant | OGRP3856 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 4e-99 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g45590.1.p |
Entrez Gene | 100834525 |
Publications ? help Back to Top | |||
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