PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g39575.1.p
Common NameBRADI_3g39575
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 284aa    MW: 31624.1 Da    PI: 7.171
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g39575.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.38.5e-131258349
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      ien++ r+vtf +Rr g++K    LS  ++a++avi+++ +gk++ +
  Bradi3g39575.1.p 12 IENDIERNVTFFRRRFGLFKGLADLSAITGARAAVILAAADGKMHSF 58
                      9********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-11161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.133262IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-6424IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-13871IPR002100Transcription factor, MADS-box
PfamPF003192.3E-131258IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-62439IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-63960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MPRRRWSGVV YIENDIERNV TFFRRRFGLF KGLADLSAIT GARAAVILAA ADGKMHSFGT  60
PSANAIVDAF LLGGPPVKSF ADEATNTRIA WLQSEMDHLD RENHMEEKRK KISIQRIKEI  120
QDENLGMVAN HLFSKKEDLN LEDLNKIFNG LLCVQQDMVH RVSLNLVPPR VQSRGGNGNP  180
PSLMHPLGSH MLPHQPSLIQ PQPVPHETLA QPFPMQAQKM LQHTELASSS LTPGQEHESP  240
SLLQLPLRNS ASPYNTMEPP QNNSSPFSTF EHNIQDPPLL VNC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g39575.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316412.10.0LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL28
TrEMBLA0A0Q3FI230.0A0A0Q3FI23_BRADI; Uncharacterized protein
STRINGBRADI1G57410.11e-101(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.14e-09AGAMOUS-like 28