PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g16377.1.p | ||||||||
Common Name | BRADI_3g16377, LOC100835128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 363aa MW: 38695.9 Da PI: 7.2687 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31 | 4.3e-10 | 103 | 128 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ Bradi3g16377.1.p 103 FKTKLCCKFRA-GTCPYVTNCNFAHGM 128 69*********.*************95 PP | |||||||
2 | zf-CCCH | 18.2 | 4.6e-06 | 176 | 201 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ Bradi3g16377.1.p 176 YKGRHCKKFYTEEGCPYGDACTFLHD 201 78888********************7 PP | |||||||
3 | zf-CCCH | 43.4 | 5.8e-14 | 241 | 266 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Bradi3g16377.1.p 241 WKTRICNKWEMTGYCPFGSKCHFAHG 266 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.79E-8 | 100 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-14 | 100 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 102 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-7 | 103 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-9 | 174 | 203 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-7 | 174 | 203 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.3 | 175 | 202 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 175 | 203 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-10 | 237 | 271 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-17 | 237 | 270 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 240 | 268 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-9 | 240 | 267 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-11 | 241 | 266 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MDYSNAIHII PDAAGPEAWV NSAVLPGGDS GIWATEDDYS QWNAEPGLTG GGYGGDRNSS 60 QPQSRSGSEQ PPPGKKPRGG PSGGGGGDAG SMSKSRAIGK MFFKTKLCCK FRAGTCPYVT 120 NCNFAHGMEE LRKPPPNWQE IVAAHEEATE QREEHQIPIM TSSSVAPSES VSGRAYKGRH 180 CKKFYTEEGC PYGDACTFLH DEQSKARESV AISLSPSVGG GSYNSPTAAA NGPTILKPSN 240 WKTRICNKWE MTGYCPFGSK CHFAHGAAEL HKYGGGLVDV EGRDIASTPD SKQAALSAKA 300 PAETTPASTA APPHSDVYHL GIQSQRSTMT SQRSGQLPRP IQKWKGPDKI SRIYGDWIDE 360 TD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g16377.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573458.1 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 0.0 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | I1I1E0 | 0.0 | I1I1E0_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G16377.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 | Representative plant | OGRP2045 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-103 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g16377.1.p |
Entrez Gene | 100835128 |