PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g16360.2.p
Common NameBRADI_3g16360, LOC100834329
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 364aa    MW: 38513.6 Da    PI: 7.0634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g16360.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.3e-10103128127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC+ f++ GtC+y  +C+FaHg+
  Bradi3g16360.2.p 103 FKTKLCCKFRA-GTCPYVTNCNFAHGM 128
                       69*********.*************95 PP
2zf-CCCH18.24.6e-06177202126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       yk + C+ f+    C+yGd C+F H+
  Bradi3g16360.2.p 177 YKGRHCKKFYTEEGCPYGDACTFLHD 202
                       78888********************7 PP
3zf-CCCH43.45.8e-14242267126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt++C+ +  tG+C++G++C+FaHg
  Bradi3g16360.2.p 242 WKTRICNKWEMTGYCPFGSKCHFAHG 267
                       8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-14100135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-8100133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028102129IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014102128IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7103128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-9175204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7175204IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629176204IPR000571Zinc finger, CCCH-type
SMARTSM003560.3176203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-17238271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-10238272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422241269IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9241268IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11242267IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPEAWA NSAAPPGGDS GIWATEDDYS QWNADPGLTV GGYGGDRNSS  60
QPRSRDGSEQ PLGKKPRGGG PSGGGGGDAG STSKSRAIGK MFFKTKLCCK FRAGTCPYVT  120
NCNFAHGMEE LRKPPPNWQE IVAAHEEATE QREEHQIPIM TSSSVAAPGD SVSGRAYKGR  180
HCKKFYTEEG CPYGDACTFL HDEQSKARES VAISLSPSVG GGSYSSPTAA ANGPTILKPS  240
NWKTRICNKW EMTGYCPFGS KCHFAHGAAE LHNYGGGLVD IDGRDIAPTP DSKQAALSAK  300
APAETAAAST AAPPHADVYH LGIQSQRSTL AGQRSGQLPR PIQKWKGPDK ISRIYGDWID  360
ETD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g16360.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573455.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-180C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLI1I1D70.0I1I1D7_BRADI; Uncharacterized protein
STRINGBRADI3G16360.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-107C3H family protein