PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g15440.1.p | ||||||||
Common Name | BRADI_3g15440, LOC100829711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 391aa MW: 40807.2 Da PI: 7.8023 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.2 | 0.00034 | 281 | 313 | 17 | 54 |
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +++eYIk L Bradi3g15440.1.p 281 GDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 313 55666677777776.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.369 | 264 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.05E-4 | 274 | 317 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-10 | 274 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-7 | 275 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MADHHQEMIR AAAVPSASMY NNGGGGVQAS RRGGSGGDWW SMAESPGSNS HAAGSSITFQ 60 EPIAPAADPA TIAAGGWNQP SFMDDGSGFH GHMSSRPSDQ AHINQPSLLM SPSSSNNNSS 120 NMMLQLQVAD QHDPNYQFLS NLGFELLSSP ASTPYATGGG SRPSSLLRSL TEPSAAAKPI 180 NYQPVTSQLP AAASVATTPF WNPTTGFDAA AYRASLEAAG PPPAQSRPAS LAAKNTLEGV 240 GDSSSCVVTK KTSSGPTAKK ARTGTPPSPL PTFKVRKEKL GDRVTALQQL VSPFGKTDTA 300 SVLHETIEYI KFLHDQVGAH SAPYLKNRQQ QVPHSKSSST DKKDNNGGEE AAARDLTGRG 360 LCLVPISSTF AVASETPVVD YWNPFGAAFR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g15440.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069366 | 4e-61 | AK069366.1 Oryza sativa Japonica Group cDNA clone:J023012B21, full insert sequence. | |||
GenBank | CT832701 | 4e-61 | CT832701.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224H06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571405.1 | 0.0 | transcription factor bHLH112 | ||||
TrEMBL | A0A0Q3F6U4 | 0.0 | A0A0Q3F6U4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G15440.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 | Representative plant | OGRP12965 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 1e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g15440.1.p |
Entrez Gene | 100829711 |