PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g05577.1.p
Common NameBRADI_3g05577, LOC100835109
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 313aa    MW: 32413 Da    PI: 5.901
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g05577.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.22.7e-16143197360
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                       ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L + N    +  ++l++  ++ +
  Bradi3g05577.1.p 143 DVKRMRRMVSNRESARRSRKRKQAHLVELETQVDQLRGDNA---SIFKQLTDANQQFT 197
                       579*************************************7...55677777776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-17141205IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-11142196No hitNo description
PROSITE profilePS5021710.703143195IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.78E-12144196No hitNo description
PfamPF001704.8E-14144195IPR004827Basic-leucine zipper domain
CDDcd147021.38E-22146196No hitNo description
PROSITE patternPS000360148163IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MKKCASELEL EAFIRGRGAA AAAVAEQKPG HAAAAAAGTH GPFGVFSAAD LAGFGFADSN  60
TLNGGIHNHL WSQSPNLGAR LPAVSTTIDS QSSIYAAASP TSATNLSMKE NQGFGGTSGS  120
DSDSESMFDM EGGLCDQSTN PTDVKRMRRM VSNRESARRS RKRKQAHLVE LETQVDQLRG  180
DNASIFKQLT DANQQFTTAV TDNRILKSDV EALRAKVKLA EKMVSQGALS CGLGHLGLSP  240
AALVPDGLAG LDFLPGGGAD DACFASLSPA EQVQGSPMQS MASLESLDHG GRMPGGGDVW  300
GWDSNSNGAL SK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163RRSRKRK
2157164RRSRKRKQ
3159164SRKRKQ
4289296GGRMPGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g05577.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570405.10.0bZIP transcription factor RISBZ4
SwissprotQ6ETX01e-126RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLI1HXT50.0I1HXT5_BRADI; Uncharacterized protein
STRINGBRADI3G05577.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Representative plantOGRP69561017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-39basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]