PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g45090.4.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 391aa    MW: 42464.8 Da    PI: 8.4023
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g45090.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.21.7e-15316341126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +ktelC+ + +tG C+yGd+C+FaHg
  Bradi2g45090.4.p 316 FKTELCNKWEETGACPYGDQCQFAHG 341
                       79***********************9 PP
2zf-CCCH19.91.3e-06354379126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ykte Cr  + +  C+yG rC+F H+
  Bradi2g45090.4.p 354 YKTEVCRMVLNGQVCPYGHRCHFRHS 379
                       9**********99**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-18310348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-10312347IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10315342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601315343IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-12316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8349381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-12349379IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014353381IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6353380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MPAPVYPRPS SSSPHLSETL SLHLIERQQK HTVVCGRKSS NQSAMQEALV SPAANADRLR  60
SAFELKAYAF GDQRLSSYLP ASGGDDALAL YRCTSPFSPS LGFSSPSPLA TSVSLSPSSS  120
ASLVDDDGDY SAADATGHRL QLARLALQCQ EVAGRYELCL SHLAEAVDEA AALRRENAEL  180
RAANTDLVHR LALLGGKQTA AIAIADDLRR FRGDHKVAVA ERSPETTKLA SMLPKSISVR  240
SNGYLKMNQQ QPAPAAPAAY NRKPRTSTPT NPSPQRAYVG ADGGGKKGGE EQKQQLQDKE  300
EQEAAAELDV YNQGMFKTEL CNKWEETGAC PYGDQCQFAH GVAELRPVIR HPRYKTEVCR  360
MVLNGQVCPY GHRCHFRHSL TPAERLLRRP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22316379467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g45090.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3605441e-125AK360544.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569444.20.0zinc finger CCCH domain-containing protein 9 isoform X1
SwissprotA2ZVY51e-115C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A2K2DDX30.0A0A2K2DDX3_BRADI; Uncharacterized protein
STRINGBRADI2G45090.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.19e-48C3H family protein