PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g38230.2.p
Common NameBRADI_2g38230, LOC100826845
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 346aa    MW: 38456.3 Da    PI: 6.5166
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g38230.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.73.6e-1950115165
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkik 65 
                       +W++ e+ a +++r ++++++ ++k++k+lWe+vs+++  ++gf r+p qCk+kw+nl +r+k  +
  Bradi2g38230.2.p  50 QWSHAETAAFLAIRADLDRSFLSTKRNKALWEAVSARLhDHGGFARTPDQCKSKWKNLVTRFKGSA 115
                       7*************************************566789*******************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122039.46E-2149114No hitNo description
PfamPF138371.2E-1450113No hitNo description
PROSITE profilePS500907.45751108IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDPFHHLNTA FSNPYHPLLS SSPPHPHYPP PLPPPPAAAA EPPERERLPQ WSHAETAAFL  60
AIRADLDRSF LSTKRNKALW EAVSARLHDH GGFARTPDQC KSKWKNLVTR FKGSAHPPPP  120
PDAADTPQHQ HHPGDHPGTG GSGGASSAAR GGGFPFHDEM RRIFDARVER ARALEAKKAK  180
GKHHARSGHD HLHPDDADDD GQGDEAGEEE DEEADILEDE EEESRAAETT RGAAGPGKKR  240
RRKSTAAPAG NEQGEVEAML REFMRRQAEM DERWAEAAEA RDAERRAREE EWRAAMVALG  300
EERLALVRRW REREDAWRAR AEEREERRHR LIAALLAKLG GGDTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237242KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g38230.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759481e-115AK375948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3110L24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566667.10.0trihelix transcription factor GT-3b
RefseqXP_014753734.10.0trihelix transcription factor GT-3b
TrEMBLI1HMM90.0I1HMM9_BRADI; Uncharacterized protein
STRINGBRADI2G38230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Representative plantOGRP1431444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.15e-21Trihelix family protein