PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g31480.1.p
Common NameBRADI_2g31480, LOC100845176
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 272aa    MW: 29359.1 Da    PI: 8.6804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g31480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1997146255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +gr++AeIrdps    rkr +lg+++taeeAa+ ++ a+++l+g
  Bradi2g31480.1.p  97 RFRGVRRRP-WGRYAAEIRDPSL---RKRLWLGTYDTAEEAAAVYDDAALRLKG 146
                       59*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-2697154IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2097154IPR016177DNA-binding domain
PROSITE profilePS5103222.16897154IPR001471AP2/ERF domain
PfamPF008471.3E-1197146IPR001471AP2/ERF domain
SMARTSM003801.1E-3297160IPR001471AP2/ERF domain
PRINTSPR003673.1E-998109IPR001471AP2/ERF domain
CDDcd000181.74E-23105153No hitNo description
PRINTSPR003673.1E-9120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
METRPSSMSA AAADSLAASR SRRPKRVRVF FVDADATESE SSDAEEEPEE RGRRRVREVI  60
DIDVPSPQAP APPSSHPARD RLLLAARRRA AMAGGGRFRG VRRRPWGRYA AEIRDPSLRK  120
RLWLGTYDTA EEAAAVYDDA ALRLKGSLAV TNFVAAKAAK ANKPRMTMKL RPPKEPAADT  180
TAVAPPLASE PEDSFYPFAS PTSVLRHELL PPAFDLLYSG LGELCDLAAA PTPSSSSKAA  240
EFDCLPWWES EDFVTPTPAG LTAATNAVSV K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1889153671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g31480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9457421e-35EU945742.1 Zea mays clone 284230 mRNA sequence.
GenBankEU9752631e-35EU975263.1 Zea mays clone 485995 AP2 domain containing protein mRNA, complete cds.
GenBankKJ7278771e-35KJ727877.1 Zea mays clone pUT5970 AP2-EREBP transcription factor (EREB52) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566397.10.0ethylene-responsive transcription factor CRF3
TrEMBLI1HKP20.0I1HKP2_BRADI; Uncharacterized protein
STRINGBRADI2G31480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.17e-06cytokinin response factor 5