PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g15872.1.p | ||||||||
Common Name | BRADI_2g15872 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 178aa MW: 19647.3 Da PI: 11.0676 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 63.6 | 3.5e-20 | 100 | 148 | 1 | 46 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk 46 ldDg +WrKYGqK++ g+++pr+Y rCt++ gC+++k+v+r+a++++ Bradi2g15872.1.p 100 LDDGLSWRKYGQKDILGAKYPRAYLRCTHRhsqGCQATKQVQRDAQQQQ 148 58***************************98999*********998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-20 | 87 | 148 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-18 | 94 | 147 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.867 | 95 | 163 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-20 | 100 | 155 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-18 | 101 | 146 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MAEDAYWWRR RRRGGLATEL DRLLEMAREL EVRVERGSPA TARDLCAALA ASVDNAVRLA 60 GTGTPRGGGA IGGKLRRKRG AMEKVRRQVR VSSVHDLAPL DDGLSWRKYG QKDILGAKYP 120 RAYLRCTHRH SQGCQATKQV QRDAQQQQGS PVGADGMQWP LEPMTPSSFP SSARHWG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-14 | 88 | 142 | 2 | 58 | Disease resistance protein RRS1 |
5w3x_D | 2e-14 | 88 | 142 | 2 | 58 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g15872.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565888.1 | 1e-72 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A0Q3FZJ5 | 1e-125 | A0A0Q3FZJ5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G15877.1 | 4e-72 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 6e-22 | WRKY DNA-binding protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g15872.1.p |