PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g11156.1.p | ||||||||
Common Name | BRADI_2g11156 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22305.9 Da PI: 10.5881 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.7 | 3.1e-18 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ri n++ r +tf +R ng+ KKA+EL +LC+++++vi++++ Bradi2g11156.1.p 10 RIPNDTARRTTFRNRHNGLVKKASELATLCNVKACVIVYGE 50 899************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-20 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.138 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.84E-25 | 2 | 82 | No hit | No description |
SuperFamily | SSF55455 | 2.88E-22 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-16 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MARKKVALRR IPNDTARRTT FRNRHNGLVK KASELATLCN VKACVIVYGE GEVQPEVWPS 60 VAEVVPILHR YKAMPDIAQC KKTMTQEGLL RQRMDKLREQ IQKARHENHK RHTASLVHNA 120 MLGRLPGLEG LAVEEVTNVG WMVQMNLKSL GERIANLQAL AALGARAQPA PSLTYEQQVP 180 HQETWIDMVR APLFHNQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g11156.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469310 | 1e-171 | KF469310.1 Brachypodium distachyon MADS-box transcription factor 15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230798.3 | 1e-143 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0Q3G064 | 1e-144 | A0A0Q3G064_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G11150.1 | 2e-68 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-28 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g11156.1.p |