PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g05750.1.p | ||||||||
Common Name | BRADI_2g05750, LOC100838769 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 386aa MW: 41204.1 Da PI: 7.4125 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.7e-08 | 123 | 143 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C +aHg Bradi2g05750.1.p 123 ACPDFRK-GGCKRGDACEYAHG 143 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.4E-5 | 118 | 144 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.103 | 119 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 122 | 145 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-6 | 123 | 143 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 23 | 153 | 176 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MMMMSEGVSV PPWGNLPVSG GVDGGGVGGC GGDEMSPHIF AALRHFLPCN DAAGGFGADD 60 EDEAAAMAAA VDAYGGDEFR MYDFKVRRCV RGRSHDWTEC PFAHPGEKAR RRDPRKYHYS 120 GTACPDFRKG GCKRGDACEY AHGVFECWLH PARYRTQACK DGTACRRRVC FFAHTREQLR 180 EMPAPQHSSP RSTPLSPLAE SYDGSPLRRQ VFESYLNNKG IVSSSPTSTY LSSPPKSPPS 240 ESPPLSPDGA AAIRRGSWPG VGSPVNDVLA SFRQLRIGKA KSAPSGGWTY PASAAVAYGS 300 PRDAGLYSLP SSPMATPTAN SSFMANLEPL SLCFMDDDEP VQRVESGRAL REKVFERLSR 360 DGTPSGGAAA GVGGPDVGWV SDLIN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g05750.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564747.1 | 0.0 | zinc finger CCCH domain-containing protein 2 | ||||
Swissprot | Q9FU27 | 0.0 | C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | I1HCW5 | 0.0 | I1HCW5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G05750.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 | Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 8e-72 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g05750.1.p |
Entrez Gene | 100838769 |
Publications ? help Back to Top | |||
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