PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g04590.1.p
Common NameBRADI_2g04590, LOC100825301
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 187aa    MW: 19803.8 Da    PI: 10.7124
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g04590.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.52.6e-1295155262
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                       ke  r +r+ +NR++A+  R+RKka++ eLe k+k Le  N +L +++++l++e  +l++ 
  Bradi2g04590.1.p  95 KEQNRLKRLLRNRVSAQQARERKKAYMTELEVKAKDLELRNAELEQKVSTLQNENNTLRQI 155
                       78899***************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-1294158IPR004827Basic-leucine zipper domain
PfamPF001704.1E-1195156IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.05996159IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.81E-1299156No hitNo description
CDDcd147041.98E-1599149No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-1699158No hitNo description
PROSITE patternPS000360101116IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAAQEQEQEK QQAKTSTTSS LPSSSERSSS SGPNNLKEGG AESDEEIRRV PEMGGGSASS  60
GAGDGKQLLL QQHGAGGQPP ASASGKKRGR AAGDKEQNRL KRLLRNRVSA QQARERKKAY  120
MTELEVKAKD LELRNAELEQ KVSTLQNENN TLRQILKNTT AHAGKKSGGG GKGGDGGKKQ  180
HHFSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490GKKRGRA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g04590.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3656481e-144AK365648.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2035O05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569436.11e-129transcription factor HY5
SwissprotQ9SM505e-43HY5_SOLLC; Transcription factor HY5
TrEMBLI1HCH71e-127I1HCH7_BRADI; Uncharacterized protein
STRINGBRADI2G04590.11e-128(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Representative plantOGRP20811737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.13e-34bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]