PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g01000.1.p
Common NameBRADI_2g01000, LOC100836013
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 273aa    MW: 28978.4 Da    PI: 4.9931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g01000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09190233755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ + RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  Bradi2g01000.1.p 190 AVAKVRRERISERLKVLQDLVPNG-----TKVDMVTMLEKAITYVKFLQ 233
                       56799*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12184240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-13185241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-12189237No hitNo description
PfamPF000102.2E-6191233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MASRHATTRE PHLRTMYDDE PSMSLELFGY HGVVVDGDDD GDTATDLPQL TFVDNFKGGC  60
GSADYYGWAY SASGGASGAC SSSSSSVLSF EQAGGAGHQL AYNAGTGDDD CALWMDGMAD  120
QHDTAKFGFM DPGMSDVSLE IQESSMKPPA KMAQKRACQG GETQAAAKKQ CGGSKKSKAK  180
AAPAKDPQSA VAKVRRERIS ERLKVLQDLV PNGTKVDMVT MLEKAITYVK FLQLQVKVLA  240
TDDFWPVQGG KAPELSQVKD ALDAILSSQN QS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g01000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565241.20.0transcription factor BHLH094
TrEMBLI1HBA80.0I1HBA8_BRADI; Uncharacterized protein
STRINGBRADI2G01000.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-42ROOT HAIR DEFECTIVE6