PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g73140.1.p
Common NameBRADI_1g73140, LOC100821143
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 86aa    MW: 9704.97 Da    PI: 7.3653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g73140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.11.1e-0612521554
                      HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
               HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                      +i + +++L+ llP++s + ++ + s +  L++++ YIk+L
  Bradi1g73140.1.p 12 EITELISKLQALLPESSrRRTASRSSASKLLKETCSYIKNL 52
                      68999**********555999999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.159152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-81175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-81168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSSRRGRITD EEITELISKL QALLPESSRR RTASRSSASK LLKETCSYIK NLHQEVDDLS  60
ERLSELMSTL DDNSPQAEII RSLLR*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g73140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935834e-73FP093583.1 Phyllostachys edulis cDNA clone: bphyst039h19, full insert sequence.
GenBankFP0952204e-73FP095220.1 Phyllostachys edulis cDNA clone: bphyst033d21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558707.11e-52transcription factor ILI3
SwissprotA2XD155e-34ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R475e-34ILI3_ORYSJ; Transcription factor ILI3
TrEMBLI1H9713e-51I1H971_BRADI; Uncharacterized protein
STRINGBRADI1G73140.15e-52(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Representative plantOGRP8216416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.17e-24bHLH family protein