PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g66345.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 271aa    MW: 28699.3 Da    PI: 8.2849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g66345.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000551561941154
                       HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +R +++ +++  L++l+ +      +K + a++L +A  +I+sL
  Bradi1g66345.2.p 156 KRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAAACIRSL 194
                       6889999**********999.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.89145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-8156209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-5156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MWNCSAPSSL LLPFSDDYVK CESSTSSTGT AGFDKILAAD YDLCHRMSLP PPSFQSLPAP  60
TLFATRSSES YFGTGDSLTY NGPAFMQFSY TQPTPAANHL VRWTAAGGEP MTGEGSSFRG  120
SKRLKTTAAA ATTQGPQHRL QCRAKPRNQA MKAPCKRSQK LGDKITALQQ LVSPYGKTDT  180
ASVLHEAAAC IRSLHDQIQI LAAPYPGLSS SPSPSSSQDA GEEPGAASLR RRGLCLMPLS  240
PAVASLVSEA ARGRGHAHTD MEEDAWFGAL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g66345.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228790.10.0uncharacterized protein LOC100826940 isoform X2
TrEMBLA0A2K2DTQ30.0A0A2K2DTQ3_BRADI; Uncharacterized protein
STRINGPavir.J38538.1.p1e-105(Panicum virgatum)
STRINGMLOC_43396.11e-104(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Representative plantOGRP1412633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.16e-22bHLH family protein