PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g61477.1.p | ||||||||
Common Name | BRADI_1g61477, LOC100841096 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GeBP | ||||||||
Protein Properties | Length: 355aa MW: 38604.3 Da PI: 5.0653 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 106.7 | 1.8e-33 | 68 | 167 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90 lfqrlw+eeDeiv+L+++ +f+a++g+ +++ d++ fye +++++++++sksql eK+rrLK+K++++v++ + sg +++f+++h+q +fe Bradi1g61477.1.p 68 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTEPFYEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVERlRGSGASFTFRSPHEQAVFE 160 79*************************9977778***************************************8889**************** PP DUF573 91 lskkiWg 97 +++ iW+ Bradi1g61477.1.p 161 IARNIWR 167 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.7E-30 | 69 | 166 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MLPMVDDPSA AAGAAASSSF PDADAYGNGD SEDIDFPVDP IPNPPFSSSA TVPAPASAAA 60 AVGERRPLFQ RLWTEEDEIV ILRAFAEFTA QRGTAFASHQ YDTEPFYEEM RRRLQLDFSK 120 SQLAEKLRRL KRKYRNCVER LRGSGASFTF RSPHEQAVFE IARNIWRPSS DKHGRDPSAG 180 DSDDDATVTA TNAGANGDAK SPSSSRAQRR VRRRRTADCT ADATEVPQPY TPSTMPVKTE 240 ESLPAFFPQV SMDGAEHVVP PAAQPAANTE SSVLTPLFKE MVRAMLGMGG CPSPLGLGAK 300 VPEPPSAILG IPMEGEKWRQ QRILELEVYL RRIDLLQDEV KSALEELKAT PAAT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g61477.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228580.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | I1H550 | 0.0 | I1H550_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G61477.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 | Representative plant | OGRP3184 | 10 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 3e-34 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g61477.1.p |
Entrez Gene | 100841096 |