PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g57875.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 297aa    MW: 33107.6 Da    PI: 7.6723
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g57875.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.7e-141764349
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                      i +++ r +tf kRr g++K A  LSvL++a+vavi+   ++gk++ +
  Bradi1g57875.2.p 17 IRDNRERDITFYKRRGGLFKSAADLSVLTGARVAVILETpENGKMHSF 64
                      88999*******************************966268999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-10767IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.04768IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-5929IPR002100Transcription factor, MADS-box
CDDcd002665.47E-161076No hitNo description
SuperFamilySSF554553.79E-151178IPR002100Transcription factor, MADS-box
PfamPF003192.6E-171764IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-52944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MPRGVPRRER RFGVQYIRDN RERDITFYKR RGGLFKSAAD LSVLTGARVA VILETPENGK  60
MHSFGTPLAE RIVDAFLSGV PPIGPLTDQA TSARIAFLQS ELARLDMENT VEEKKTKLST  120
QVIKEIQDEN PGMVANLLFS RQEDLCLADL IRLFNEFSRV QQNIARRVPP LHRVPGQNGA  180
SMSTIHPPPR VPSWGPLPPQ SSSPDILRQQ PLCPAAAIPL APQHMMAPNF PVQNYTSRIN  240
TVEPPQNNAV PNSTFEHSEL ASPLLVYTGG NNFDIDDPFG NEHWRFTLSD QPQWAM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511PRRERRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g57875.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230084.10.0uncharacterized protein LOC104582323
TrEMBLA0A2K2DS540.0A0A2K2DS54_BRADI; Uncharacterized protein
STRINGBRADI1G57870.11e-110(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-10AGAMOUS-like 61