PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g31700.2.p | ||||||||
Common Name | BRADI_1g31700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bZIP | ||||||||
Protein Properties | Length: 330aa MW: 35403 Da PI: 6.5013 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.5 | 2.8e-13 | 167 | 216 | 6 | 55 |
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 r rr+ +NRe+ArrsR+RK a++ Le v++L++e +L k+l e +++ Bradi1g31700.2.p 167 RIRRMVSNRESARRSRRRKHAQLTDLELQVEQLKSESASLFKQLTEASQH 216 89*************************************99777766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.0E-12 | 162 | 226 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.185 | 164 | 215 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.9E-10 | 167 | 215 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.7E-11 | 167 | 216 | No hit | No description |
Pfam | PF00170 | 1.7E-10 | 167 | 215 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 169 | 184 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MKKCASELEL EAFIRQHLAA ERNRPSPGTD AGVFSSTHGG GLPVPGLCFG DSVSIATLLQ 60 ACILALASAV LCLCCVHGLT ELHHMLQQKA LELEGSDAGH QWWSDGVCAP HPAVSSTMGS 120 QTAAVSASPR ETTSGNQALE SESESGSESL IDIEGGQCNR KSTDTMRIRR MVSNRESARR 180 SRRRKHAQLT DLELQVEQLK SESASLFKQL TEASQHFTSA VTDNRILKSD VETLRVKVKM 240 AEDMVARTAM SCNVGQLGSA PFLNSRKMCQ ALDMLTATGL DLPGNHALFK DPTPARQVQT 300 STVQSTASLE SLDNRMSSEV TSCAGDMWP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:22189955}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g31700.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress in roots. {ECO:0000269|PubMed:22189955}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010240308.1 | 0.0 | bZIP transcription factor RISBZ5 isoform X1 | ||||
Swissprot | Q654B3 | 7e-81 | RSBZ5_ORYSJ; bZIP transcription factor RISBZ5 | ||||
TrEMBL | A0A0Q3NHR3 | 0.0 | A0A0Q3NHR3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G31700.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2095 | 37 | 96 | Representative plant | OGRP6956 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 4e-26 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g31700.2.p |
Publications ? help Back to Top | |||
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