PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.8169s0043.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GeBP | ||||||||
Protein Properties | Length: 94aa MW: 10319.6 Da PI: 4.8954 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 35.7 | 2.4e-11 | 52 | 84 | 6 | 37 |
DUF573 6 l.wseeDeivlLqGlidfkaktgkspsddidaf 37 + w eeDei+lLqG+idfka tgk+p+dd +++ Bostr.8169s0043.1.p 52 IkWDEEDEILLLQGMIDFKAITGKNPFDDDKQV 84 55**************************86654 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MGEVNTNRSK KKEVCGGSGE LQLTGKKQKN EETLTNKDVN VNDAKMASSQ GIKWDEEDEI 60 LLLQGMIDFK AITGKNPFDD DKQVMVHEGG KCF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.8169s0043.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870618.1 | 8e-25 | probable transcription factor At4g00232 | ||||
Swissprot | Q3EAE7 | 5e-23 | STKLL_ARATH; Probable transcription factor At4g00232 | ||||
TrEMBL | D7MIR8 | 2e-23 | D7MIR8_ARALL; Uncharacterized protein | ||||
STRING | Bostr.8169s0043.1.p | 2e-61 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16691 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00232.1 | 2e-25 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Bostr.8169s0043.1.p |