PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s0372.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 584aa    MW: 65560.9 Da    PI: 9.5866
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s0372.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000246283223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         kC++C++ F ++ n++rH r+H
  Bostr.7867s0372.1.p 62 KCEKCTREFCSPVNYRRHNRMH 83
                         7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.4296188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MELVKQDGND SLDMLIRRAV GKDPFLSFPR PENSPVQLFQ LLHTLERPGW PLLTPLKIPM  60
QKCEKCTREF CSPVNYRRHN RMHRRQRKPE KDSGKERDAL GAFWNKLSAI DAKEILSLKS  120
MMLEDVPGAS VESGLMSLIE KPGYTALPQY YLRAGSGILD ILQARPPRFP VSSQELFSIL  180
DDASEKTFLC NEAAPMQKYI FDGDIGKNVL EAKNVVACAS FLLEQRLIKA WLADKDAEAL  240
RCQNLLVEEE EAARRRQAEL LERKKRKKLR QKEQREKDQK KDAKEDESTT SEEQQYPAES  300
SSQLSVASDS EAQRPDSIPI DAFSSLEDPQ VLETNNGRNG ECQAPMVDDD GFSNGQNMER  360
RNGRRSNGFH ANHAPKLGGM RKNGINRDTR VNTAKVWSRK SNNPKSISQH AAVTQLDQTK  420
NSEVLIGSMS VTIRKSGLSG EHNQTKSSEE EGRTKTVEAK PTSEQSTVKM WRPVSSQGRK  480
VSTVDENADK EDKNSNPTAP EVKTAHHHIS LQFNNHEAKA FLAKRWKEAT SAEHMTLVLS  540
QETDISGNNT HESSNGAITA RPKPRMKPGK GTKVKYVPKQ RIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253267RRRQAELLERKKRKK
2261268ERKKRKKL
3263267KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.7867s0372.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0812940.0AY081294.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
GenBankBT0003860.0BT000386.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283401.10.0uncharacterized protein LOC17880604
RefseqXP_023633838.10.0uncharacterized protein LOC17880604
TrEMBLR0GHK90.0R0GHK9_9BRAS; Uncharacterized protein
STRINGBostr.7867s0372.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.10.0C2H2-like zinc finger protein